- minMismatchToTrimera = getTrimera(left, right, leftParentTri, middleParentTri, rightParentTri, breakPointTriA, breakPointTriB, singleLeft, bestLeft, singleRight, bestRight);
-
- if(minMismatchToChimera - minMismatchToTrimera <= 3){
- nMera = 2;
- chimeraRefSeq = stitchBimera(leftParentBi, rightParentBi, breakPointBi);
- }
- else{
- nMera = 3;
- chimeraRefSeq = stitchTrimera(leftParentTri, middleParentTri, rightParentTri, breakPointTriA, breakPointTriB);
- }
+// minMismatchToTrimera = getTrimera(left, right, leftParentTri, middleParentTri, rightParentTri, breakPointTriA, breakPointTriB, singleLeft, bestLeft, singleRight, bestRight);
+//
+// if(minMismatchToChimera - minMismatchToTrimera <= 3){
+// nMera = 2;
+// chimeraRefSeq = stitchBimera(leftParentBi, rightParentBi, breakPointBi);
+// }
+// else{
+// nMera = 3;
+// chimeraRefSeq = stitchTrimera(leftParentTri, middleParentTri, rightParentTri, breakPointTriA, breakPointTriB);
+// }