- cout << "The read.tree command must be run before you execute a unifrac.weighted, unifrac.unweighted. " << "\n";
- cout << "It also must be run before using the parsimony command, unless you are using the randomtree parameter." << "\n";
- cout << "The read.tree command should be in the following format: read.tree(tree=yourTreeFile, group=yourGroupFile)." << "\n";
- cout << "The tree and group parameters are both required." << "\n";
- cout << "Note: No spaces between parameter labels (i.e. tree), '=' and parameters (i.e.yourTreefile)." << "\n" << "\n";
+ mothurOut("The read.tree command must be run before you execute a unifrac.weighted, unifrac.unweighted. \n");
+ mothurOut("It also must be run before using the parsimony command, unless you are using the randomtree parameter.\n");
+ mothurOut("The read.tree command should be in the following format: read.tree(tree=yourTreeFile, group=yourGroupFile).\n");
+ mothurOut("The tree and group parameters are both required.\n");
+ mothurOut("Note: No spaces between parameter labels (i.e. tree), '=' and parameters (i.e.yourTreefile).\n\n");