+//**********************************************************************************************************************
+vector<string> ReadOtuCommand::getValidParameters(){
+ try {
+ string Array[] = {"list","order","shared","relabund","label","group","sabund", "rabund","groups","ordergroup","outputdir","inputdir"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ReadOtuCommand", "getValidParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+ReadOtuCommand::ReadOtuCommand(){
+ try {
+ abort = true;
+ //initialize outputTypes
+ vector<string> tempOutNames;
+ outputTypes["rabund"] = tempOutNames;
+ outputTypes["shared"] = tempOutNames;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ReadOtuCommand", "ReadOtuCommand");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> ReadOtuCommand::getRequiredParameters(){
+ try {
+ string Array[] = {"list","shared","relabund","sabund","rabund","or"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ChopSeqsCommand", "getRequiredParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> ReadOtuCommand::getRequiredFiles(){
+ try {
+ vector<string> myArray;
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ReadOtuCommand", "getRequiredFiles");
+ exit(1);
+ }
+}