- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+
+ vector<string> setParameters() { return outputNames; } //dummy, doesn't really do anything
+ string getCommandName() { return "quit"; }
+ string getCommandCategory() { return "Hidden"; }
+ string getHelpString() { return "The quit command will terminate mothur and should be in the following format: quit() or quit. \n"; }
+ string getOutputPattern(string) { return ""; }
+ string getCitation() { return "no citation"; }
+ string getDescription() { return "quit"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
+