vector<int> windowsForeachQuery; // windowsForeachQuery is a vector containing the starting spot in query aligned sequence for each window.
//this is needed so you can move by bases and not just spots in the alignment
vector<int> windowsForeachQuery; // windowsForeachQuery is a vector containing the starting spot in query aligned sequence for each window.
//this is needed so you can move by bases and not just spots in the alignment
- int windowSizes; //windowSizes = window size of query
+ int windowSizes; //windowSizes = window size of query
vector<int> windowSizesTemplate; //windowSizesTemplate[0] = window size of templateSeqs[0]
map<int, int> trimmed; //trimmed = start and stop of trimmed sequences for query
vector<int> windowSizesTemplate; //windowSizesTemplate[0] = window size of templateSeqs[0]
map<int, int> trimmed; //trimmed = start and stop of trimmed sequences for query
@@ -63,15+66,17 @@ class Pintail : public Chimera {
float DE; //DE is the deviaation for query
vector<float> probabilityProfile;
vector< vector<float> > quantiles; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
float DE; //DE is the deviaation for query
vector<float> probabilityProfile;
vector< vector<float> > quantiles; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
- vector< vector<quanMember> > quantilesMembers; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...
+ vector< vector<float> > quantilesMembers; //quantiles[0] is the vector of deviations with ceiling score of 1, quantiles[1] is the vector of deviations with ceiling score of 2...