- vector<Sequence*> bestfit; //bestfit[0] matches queryseqs[0]...
-
- vector< vector<float> > obsDistance; //obsDistance[0] is the vector of observed distances for queryseqs[0]...
- vector< vector<float> > expectedDistance; //expectedDistance[0] is the vector of expected distances for queryseqs[0]...
- vector<float> deviation; //deviation[0] is the percentage of mismatched pairs over the whole seq between querySeqs[0] and its best match.
- vector< vector<int> > windowsForeachQuery; // windowsForeachQuery[0] is a vector containing the starting spot in queryseqs[0] aligned sequence for each window.
+ vector<float> obsDistance; //obsDistance is the vector of observed distances for query
+ vector<float> expectedDistance; //expectedDistance is the vector of expected distances for query
+ float deviation; //deviation is the percentage of mismatched pairs over the whole seq between query and its best match.
+ vector<int> windowsForeachQuery; // windowsForeachQuery is a vector containing the starting spot in query aligned sequence for each window.