float freq;
int iters, processors, numUniquesInName;
bool abort, rarefy, summary, collect, scale;
float freq;
int iters, processors, numUniquesInName;
bool abort, rarefy, summary, collect, scale;
- string groups, outputDir, treefile, groupfile, namefile;
+ string groups, outputDir, treefile, groupfile, namefile, countfile;
vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
map<string, int> getRootForGroups(Tree* t);
vector<string> Groups, outputNames; //holds groups to be used, and outputFile names
map<string, int> getRootForGroups(Tree* t);