string outFile = outputDir + getRootName(getSimpleName(globaldata->getTreeFile())) + toString(i+1) + ".phylo.diversity";
if (rarefy) { outFile += ".rarefaction"; }
string outFile = outputDir + getRootName(getSimpleName(globaldata->getTreeFile())) + toString(i+1) + ".phylo.diversity";
if (rarefy) { outFile += ".rarefaction"; }