bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
bool abort, keepprimer, keepdots;
string fastafile, oligosfile, taxfile, groupfile, namefile, ecolifile, outputDir, nomatch;
bool getOligos(vector<vector<string> >&, vector<vector<string> >&, vector<vector<string> >&);
bool abort, keepprimer, keepdots;
string fastafile, oligosfile, taxfile, groupfile, namefile, ecolifile, outputDir, nomatch;