+ vector<string> setParameters();
+ string getCommandName() { return "parse.fastq"; }
+ string getCommandCategory() { return "Sequence Processing"; }
+ string getOutputFileNameTag(string, string);
+ string getHelpString();
+ string getCitation() { return "http://www.mothur.org/wiki/Parse.fastq"; }
+ string getDescription() { return "reads a fastq file and creates a fasta and quality file"; }
+
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }