int rowIndex = maxRow(alignment, band); // get the index for the row with the highest right hand side score
int colIndex = maxColumn(alignment, band); // get the index for the column with the highest bottom row score
int rowIndex = maxRow(alignment, band); // get the index for the row with the highest right hand side score
int colIndex = maxColumn(alignment, band); // get the index for the column with the highest bottom row score