- public:
- OptionParser() {}
- ~OptionParser() {}
- void parse(string, map<string, string>&); //pass it an option string and a container
- //fills the container key=parameter name, value=parameter value
+public:
+ OptionParser(string);
+ OptionParser(string, map<string, string>&);
+ ~OptionParser() {}
+ map<string, string> getParameters();
+ bool getNameFile(vector<string>);
+private:
+ map<string, string> parameters;
+ MothurOut* m;