- int output(vector< vector<double> >&, vector<string>&, ofstream&);
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- //vector<seqDist> satisfyMonotonicity(vector<seqDist>, vector<int>);
- //vector< vector<double> > calculateStressGradientVector(vector<seqDist>&, vector<seqDist>&, double, double, vector< vector<double> >&);
- //double calculateMagnitude(vector< vector<double> >&);
- //double calculateStep(vector< vector<double> >&, vector< vector<double> >&, vector<double>&);
- //vector< vector<double> > calculateNewConfiguration(double, vector< vector<double> >&, vector< vector<double> >&);
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