- string getCommandName() { return "mgcluster"; }
- string getCommandCategory() { return "OTU-Based Approaches"; }
+ string getCommandName() { return "mgcluster"; }
+ string getCommandCategory() { return "Clustering"; }
+ string getOutputFileNameTag(string, string);
- string blastfile, method, namefile, overlapFile, distFile, outputDir;
+ string blastfile, method, namefile, countfile, overlapFile, distFile, outputDir;
ListVector* mergeOPFs(map<string, int>, float);
void sortHclusterFiles(string, string);
vector<seqDist> getSeqs(ifstream&);
ListVector* mergeOPFs(map<string, int>, float);
void sortHclusterFiles(string, string);
vector<seqDist> getSeqs(ifstream&);