#include "nameassignment.hpp"
#include "cluster.hpp"
#include "hcluster.h"
#include "rabundvector.hpp"
#include "sabundvector.hpp"
#include "nameassignment.hpp"
#include "cluster.hpp"
#include "hcluster.h"
#include "rabundvector.hpp"
#include "sabundvector.hpp"
- string blastfile, method, namefile, overlapFile, distFile, outputDir;
+ string blastfile, method, namefile, countfile, overlapFile, distFile, outputDir;
ListVector* mergeOPFs(map<string, int>, float);
void sortHclusterFiles(string, string);
vector<seqDist> getSeqs(ifstream&);
ListVector* mergeOPFs(map<string, int>, float);
void sortHclusterFiles(string, string);
vector<seqDist> getSeqs(ifstream&);