+ }else if (countfile != "") {
+ ct = new CountTable();
+ ct->readTable(countfile, false);
+ nameMap= new NameAssignment();
+ vector<string> tempNames = ct->getNamesOfSeqs();
+ for (int i = 0; i < tempNames.size(); i++) { nameMap->push_back(tempNames[i]); }
+ }else{ nameMap= new NameAssignment(); }