nameMap= new NameAssignment();
vector<string> tempNames = ct->getNamesOfSeqs();
for (int i = 0; i < tempNames.size(); i++) { nameMap->push_back(tempNames[i]); }
nameMap= new NameAssignment();
vector<string> tempNames = ct->getNamesOfSeqs();
for (int i = 0; i < tempNames.size(); i++) { nameMap->push_back(tempNames[i]); }
m->openOutputFile(rabundFileName, rabundFile);
}
m->openOutputFile(listFileName, listFile);
m->openOutputFile(rabundFileName, rabundFile);
}
m->openOutputFile(listFileName, listFile);