+rsem-get-unique : sam/bam.h sam/sam.h getUnique.cpp sam/libbam.a
+ $(CC) -O3 -Wall getUnique.cpp sam/libbam.a -lz -o $@
+
+rsem-sam-validator : sam/bam.h sam/sam.h my_assert.h samValidator.cpp sam/libbam.a
+ $(CC) -O3 -Wall samValidator.cpp sam/libbam.a -lz -o $@
+
+rsem-scan-for-paired-end-reads : sam/bam.h sam/sam.h my_assert.h scanForPairedEndReads.cpp sam/libbam.a
+ $(CC) -O3 -Wall scanForPairedEndReads.cpp sam/libbam.a -lz -o $@
+
+ebseq :
+ cd EBSeq ; ${MAKE} all
+
+clean :