rsem-extract-reference-transcripts : utils.h GTFItem.h Transcript.h Transcripts.h extractRef.cpp
$(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
rsem-extract-reference-transcripts : utils.h GTFItem.h Transcript.h Transcripts.h extractRef.cpp
$(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
rsem-parse-alignments : parseIt.o sam/libbam.a
$(CC) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz
rsem-parse-alignments : parseIt.o sam/libbam.a
$(CC) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz
Gibbs.o : utils.h my_assert.h boost/random.hpp sampling.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h Gibbs.cpp
$(CC) $(COFLAGS) Gibbs.cpp
Gibbs.o : utils.h my_assert.h boost/random.hpp sampling.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h Gibbs.cpp
$(CC) $(COFLAGS) Gibbs.cpp
rsem-calculate-credibility-intervals : calcCI.o
$(CC) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
rsem-calculate-credibility-intervals : calcCI.o
$(CC) -o rsem-calculate-credibility-intervals calcCI.o -lpthread