-# Item # 98 -- inputdata --\r
-./inputdata.o : inputdata.cpp\r
- $(CC) $(CC_OPTIONS) inputdata.cpp -c $(INCLUDE) -o ./inputdata.o\r
-\r
-\r
-# Item # 99 -- jackknife --\r
-./jackknife.o : jackknife.cpp\r
- $(CC) $(CC_OPTIONS) jackknife.cpp -c $(INCLUDE) -o ./jackknife.o\r
-\r
-\r
-# Item # 100 -- kmer --\r
-./kmer.o : kmer.cpp\r
- $(CC) $(CC_OPTIONS) kmer.cpp -c $(INCLUDE) -o ./kmer.o\r
-\r
-\r
-# Item # 101 -- kmerdb --\r
-./kmerdb.o : kmerdb.cpp\r
- $(CC) $(CC_OPTIONS) kmerdb.cpp -c $(INCLUDE) -o ./kmerdb.o\r
-\r
-\r
-# Item # 102 -- listvector --\r
-./listvector.o : listvector.cpp\r
- $(CC) $(CC_OPTIONS) listvector.cpp -c $(INCLUDE) -o ./listvector.o\r
-\r
-\r
-# Item # 103 -- mothur --\r
-./mothur.o : mothur.cpp\r
- $(CC) $(CC_OPTIONS) mothur.cpp -c $(INCLUDE) -o ./mothur.o\r
-\r
-\r
-# Item # 104 -- nameassignment --\r
-./nameassignment.o : nameassignment.cpp\r
- $(CC) $(CC_OPTIONS) nameassignment.cpp -c $(INCLUDE) -o ./nameassignment.o\r
-\r
-\r
-# Item # 105 -- npshannon --\r
-./npshannon.o : npshannon.cpp\r
- $(CC) $(CC_OPTIONS) npshannon.cpp -c $(INCLUDE) -o ./npshannon.o\r
-\r
-\r
-# Item # 106 -- ordervector --\r
-./ordervector.o : ordervector.cpp\r
- $(CC) $(CC_OPTIONS) ordervector.cpp -c $(INCLUDE) -o ./ordervector.o\r
-\r
-\r
-# Item # 107 -- progress --\r
-./progress.o : progress.cpp\r
- $(CC) $(CC_OPTIONS) progress.cpp -c $(INCLUDE) -o ./progress.o\r
-\r
-\r
-# Item # 108 -- quitcommand --\r
-./quitcommand.o : quitcommand.cpp\r
- $(CC) $(CC_OPTIONS) quitcommand.cpp -c $(INCLUDE) -o ./quitcommand.o\r
-\r
-\r
-# Item # 109 -- rabundvector --\r
-./rabundvector.o : rabundvector.cpp\r
- $(CC) $(CC_OPTIONS) rabundvector.cpp -c $(INCLUDE) -o ./rabundvector.o\r
-\r
-\r
-# Item # 110 -- rarecalc --\r
-./rarecalc.o : rarecalc.cpp\r
- $(CC) $(CC_OPTIONS) rarecalc.cpp -c $(INCLUDE) -o ./rarecalc.o\r
-\r
-\r
-# Item # 111 -- raredisplay --\r
-./raredisplay.o : raredisplay.cpp\r
- $(CC) $(CC_OPTIONS) raredisplay.cpp -c $(INCLUDE) -o ./raredisplay.o\r
-\r
-\r
-# Item # 112 -- rarefact --\r
-./rarefact.o : rarefact.cpp\r
- $(CC) $(CC_OPTIONS) rarefact.cpp -c $(INCLUDE) -o ./rarefact.o\r
-\r
-\r
-# Item # 113 -- rarefactcommand --\r
-./rarefactcommand.o : rarefactcommand.cpp\r
- $(CC) $(CC_OPTIONS) rarefactcommand.cpp -c $(INCLUDE) -o ./rarefactcommand.o\r
-\r
-\r
-# Item # 114 -- rarefactsharedcommand --\r
-./rarefactsharedcommand.o : rarefactsharedcommand.cpp\r
- $(CC) $(CC_OPTIONS) rarefactsharedcommand.cpp -c $(INCLUDE) -o ./rarefactsharedcommand.o\r
-\r
-\r
-# Item # 115 -- sabundvector --\r
-./sabundvector.o : sabundvector.cpp\r
- $(CC) $(CC_OPTIONS) sabundvector.cpp -c $(INCLUDE) -o ./sabundvector.o\r
-\r
-\r
-# Item # 116 -- sequence --\r
-./sequence.o : sequence.cpp\r
- $(CC) $(CC_OPTIONS) sequence.cpp -c $(INCLUDE) -o ./sequence.o\r
-\r
-\r
-# Item # 117 -- shannon --\r
-./shannon.o : shannon.cpp\r
- $(CC) $(CC_OPTIONS) shannon.cpp -c $(INCLUDE) -o ./shannon.o\r
-\r
-\r
-# Item # 118 -- sharedace --\r
-./sharedace.o : sharedace.cpp\r
- $(CC) $(CC_OPTIONS) sharedace.cpp -c $(INCLUDE) -o ./sharedace.o\r
-\r
-\r
-# Item # 119 -- sharedchao1 --\r
-./sharedchao1.o : sharedchao1.cpp\r
- $(CC) $(CC_OPTIONS) sharedchao1.cpp -c $(INCLUDE) -o ./sharedchao1.o\r
-\r
-\r
-# Item # 120 -- sharedcommand --\r
-./sharedcommand.o : sharedcommand.cpp\r
- $(CC) $(CC_OPTIONS) sharedcommand.cpp -c $(INCLUDE) -o ./sharedcommand.o\r
-\r
-\r
-# Item # 121 -- sharedjabund --\r
-./sharedjabund.o : sharedjabund.cpp\r
- $(CC) $(CC_OPTIONS) sharedjabund.cpp -c $(INCLUDE) -o ./sharedjabund.o\r
-\r
-\r
-# Item # 122 -- sharedjclass --\r
-./sharedjclass.o : sharedjclass.cpp\r
- $(CC) $(CC_OPTIONS) sharedjclass.cpp -c $(INCLUDE) -o ./sharedjclass.o\r
-\r
-\r
-# Item # 123 -- sharedjest --\r
-./sharedjest.o : sharedjest.cpp\r
- $(CC) $(CC_OPTIONS) sharedjest.cpp -c $(INCLUDE) -o ./sharedjest.o\r
-\r
-\r
-# Item # 124 -- sharedordervector --\r
-./sharedordervector.o : sharedordervector.cpp\r
- $(CC) $(CC_OPTIONS) sharedordervector.cpp -c $(INCLUDE) -o ./sharedordervector.o\r
-\r
-\r
-# Item # 125 -- sharedrabundvector --\r
-./sharedrabundvector.o : sharedrabundvector.cpp\r
- $(CC) $(CC_OPTIONS) sharedrabundvector.cpp -c $(INCLUDE) -o ./sharedrabundvector.o\r
-\r
-\r
-# Item # 126 -- sharedsabundvector --\r
-./sharedsabundvector.o : sharedsabundvector.cpp\r
- $(CC) $(CC_OPTIONS) sharedsabundvector.cpp -c $(INCLUDE) -o ./sharedsabundvector.o\r
-\r
-\r
-# Item # 127 -- sharedsobs --\r
-./sharedsobs.o : sharedsobs.cpp\r
- $(CC) $(CC_OPTIONS) sharedsobs.cpp -c $(INCLUDE) -o ./sharedsobs.o\r
-\r
-\r
-# Item # 128 -- sharedsorabund --\r
-./sharedsorabund.o : sharedsorabund.cpp\r
- $(CC) $(CC_OPTIONS) sharedsorabund.cpp -c $(INCLUDE) -o ./sharedsorabund.o\r
-\r
-\r
-# Item # 129 -- sharedsorclass --\r
-./sharedsorclass.o : sharedsorclass.cpp\r
- $(CC) $(CC_OPTIONS) sharedsorclass.cpp -c $(INCLUDE) -o ./sharedsorclass.o\r
-\r
-\r
-# Item # 130 -- sharedsorest --\r
-./sharedsorest.o : sharedsorest.cpp\r
- $(CC) $(CC_OPTIONS) sharedsorest.cpp -c $(INCLUDE) -o ./sharedsorest.o\r
-\r
-\r
-# Item # 131 -- sharedthetan --\r
-./sharedthetan.o : sharedthetan.cpp\r
- $(CC) $(CC_OPTIONS) sharedthetan.cpp -c $(INCLUDE) -o ./sharedthetan.o\r
-\r
-\r
-# Item # 132 -- sharedthetayc --\r
-./sharedthetayc.o : sharedthetayc.cpp\r
- $(CC) $(CC_OPTIONS) sharedthetayc.cpp -c $(INCLUDE) -o ./sharedthetayc.o\r
-\r
-\r
-# Item # 133 -- simpson --\r
-./simpson.o : simpson.cpp\r
- $(CC) $(CC_OPTIONS) simpson.cpp -c $(INCLUDE) -o ./simpson.o\r
-\r
-\r
-# Item # 134 -- singlelinkage --\r
-./singlelinkage.o : singlelinkage.cpp\r
- $(CC) $(CC_OPTIONS) singlelinkage.cpp -c $(INCLUDE) -o ./singlelinkage.o\r
-\r
-\r
-# Item # 135 -- sparsematrix --\r
-./sparsematrix.o : sparsematrix.cpp\r
- $(CC) $(CC_OPTIONS) sparsematrix.cpp -c $(INCLUDE) -o ./sparsematrix.o\r
-\r
-\r
-# Item # 136 -- summarycommand --\r
-./summarycommand.o : summarycommand.cpp\r
- $(CC) $(CC_OPTIONS) summarycommand.cpp -c $(INCLUDE) -o ./summarycommand.o\r
-\r
-\r
-# Item # 137 -- summarysharedcommand --\r
-./summarysharedcommand.o : summarysharedcommand.cpp\r
- $(CC) $(CC_OPTIONS) summarysharedcommand.cpp -c $(INCLUDE) -o ./summarysharedcommand.o\r
-\r
-\r
-# Item # 138 -- uvest --\r
-./uvest.o : uvest.cpp\r
- $(CC) $(CC_OPTIONS) uvest.cpp -c $(INCLUDE) -o ./uvest.o\r
-\r
-\r
-# Item # 139 -- validcalculator --\r
-./validcalculator.o : validcalculator.cpp\r
- $(CC) $(CC_OPTIONS) validcalculator.cpp -c $(INCLUDE) -o ./validcalculator.o\r
-\r
-\r
-# Item # 140 -- validparameter --\r
-./validparameter.o : validparameter.cpp\r
- $(CC) $(CC_OPTIONS) validparameter.cpp -c $(INCLUDE) -o ./validparameter.o\r
-\r
-\r
-# Item # 141 -- treenode --\r
-./treenode.o : treenode.cpp\r
- $(CC) $(CC_OPTIONS) treenode.cpp -c $(INCLUDE) -o ./treenode.o\r
-\r
-\r
-# Item # 142 -- readtreecommand --\r
-./readtreecommand.o : readtreecommand.cpp\r
- $(CC) $(CC_OPTIONS) readtreecommand.cpp -c $(INCLUDE) -o ./readtreecommand.o\r
-\r
-\r
-# Item # 143 -- reversecommand --\r
-./reversecommand.o : reversecommand.cpp\r
- $(CC) $(CC_OPTIONS) reversecommand.cpp -c $(INCLUDE) -o ./reversecommand.o\r
-\r
-\r
-# Item # 144 -- trimseqscommand --\r
-./trimseqscommand.o : trimseqscommand.cpp\r
- $(CC) $(CC_OPTIONS) trimseqscommand.cpp -c $(INCLUDE) -o ./trimseqscommand.o\r
-\r
-\r
-# Item # 145 -- slibshuff --\r
-./slibshuff.o : slibshuff.cpp\r
- $(CC) $(CC_OPTIONS) slibshuff.cpp -c $(INCLUDE) -o ./slibshuff.o\r
-\r
-\r
-# Item # 146 -- libshuff --\r
-./libshuff.o : libshuff.cpp\r
- $(CC) $(CC_OPTIONS) libshuff.cpp -c $(INCLUDE) -o ./libshuff.o\r
-\r
-\r
-# Item # 147 -- dlibshuff --\r
-./dlibshuff.o : dlibshuff.cpp\r
- $(CC) $(CC_OPTIONS) dlibshuff.cpp -c $(INCLUDE) -o ./dlibshuff.o\r
-\r
-\r
-# Item # 148 -- mergefilecommand --\r
-./mergefilecommand.o : mergefilecommand.cpp\r
- $(CC) $(CC_OPTIONS) mergefilecommand.cpp -c $(INCLUDE) -o ./mergefilecommand.o\r
-\r
-\r
-# Item # 149 -- coverage --\r
-./coverage.o : coverage.cpp\r
- $(CC) $(CC_OPTIONS) coverage.cpp -c $(INCLUDE) -o ./coverage.o\r
-\r
-\r
-# Item # 150 -- whittaker --\r
-./whittaker.o : whittaker.cpp\r
- $(CC) $(CC_OPTIONS) whittaker.cpp -c $(INCLUDE) -o ./whittaker.o\r
-\r
-\r
-# Item # 151 -- preclustercommand --\r
-./preclustercommand.o : preclustercommand.cpp\r
- $(CC) $(CC_OPTIONS) preclustercommand.cpp -c $(INCLUDE) -o ./preclustercommand.o\r
-\r
-\r
-# Item # 152 -- otuhierarchycommand --\r
-./otuhierarchycommand.o : otuhierarchycommand.cpp\r
- $(CC) $(CC_OPTIONS) otuhierarchycommand.cpp -c $(INCLUDE) -o ./otuhierarchycommand.o\r
-\r
-\r
-# Item # 153 -- setdircommand --\r
-./setdircommand.o : setdircommand.cpp\r
- $(CC) $(CC_OPTIONS) setdircommand.cpp -c $(INCLUDE) -o ./setdircommand.o\r
-\r
-\r
-# Item # 154 -- getgroupcommand --\r
-./getgroupcommand.o : getgroupcommand.cpp\r
- $(CC) $(CC_OPTIONS) getgroupcommand.cpp -c $(INCLUDE) -o ./getgroupcommand.o\r
-\r
-\r
-# Item # 155 -- getlabelcommand --\r
-./getlabelcommand.o : getlabelcommand.cpp\r
- $(CC) $(CC_OPTIONS) getlabelcommand.cpp -c $(INCLUDE) -o ./getlabelcommand.o\r
-\r
-\r
-# Item # 156 -- secondarystructurecommand --\r
-./secondarystructurecommand.o : secondarystructurecommand.cpp\r
- $(CC) $(CC_OPTIONS) secondarystructurecommand.cpp -c $(INCLUDE) -o ./secondarystructurecommand.o\r
-\r
-\r
-# Item # 157 -- mothurout --\r
-./mothurout.o : mothurout.cpp\r
- $(CC) $(CC_OPTIONS) mothurout.cpp -c $(INCLUDE) -o ./mothurout.o\r
-\r
-\r
-# Item # 158 -- parselistscommand --\r
-./parselistscommand.o : parselistscommand.cpp\r
- $(CC) $(CC_OPTIONS) parselistscommand.cpp -c $(INCLUDE) -o ./parselistscommand.o\r
-\r
-\r
-# Item # 159 -- readblast --\r
-./readblast.o : readblast.cpp\r
- $(CC) $(CC_OPTIONS) readblast.cpp -c $(INCLUDE) -o ./readblast.o\r
-\r
-\r
-# Item # 160 -- chimeracheckrdp --\r
-./chimeracheckrdp.o : chimeracheckrdp.cpp\r
- $(CC) $(CC_OPTIONS) chimeracheckrdp.cpp -c $(INCLUDE) -o ./chimeracheckrdp.o\r
-\r
-\r
-# Item # 161 -- hclustercommand --\r
-./hclustercommand.o : hclustercommand.cpp\r
- $(CC) $(CC_OPTIONS) hclustercommand.cpp -c $(INCLUDE) -o ./hclustercommand.o\r
-\r
-\r
-# Item # 162 -- hcluster --\r
-./hcluster.o : hcluster.cpp\r
- $(CC) $(CC_OPTIONS) hcluster.cpp -c $(INCLUDE) -o ./hcluster.o\r
-\r
-\r
-# Item # 163 -- getlistcountcommand --\r
-./getlistcountcommand.o : getlistcountcommand.cpp\r
- $(CC) $(CC_OPTIONS) getlistcountcommand.cpp -c $(INCLUDE) -o ./getlistcountcommand.o\r
-\r
-\r
-# Item # 164 -- readcluster --\r
-./readcluster.o : readcluster.cpp\r
- $(CC) $(CC_OPTIONS) readcluster.cpp -c $(INCLUDE) -o ./readcluster.o\r
-\r
-\r
-# Item # 165 -- ccode --\r
-./ccode.o : ccode.cpp\r
- $(CC) $(CC_OPTIONS) ccode.cpp -c $(INCLUDE) -o ./ccode.o\r
-\r
-\r
-# Item # 166 -- taxonomyequalizer --\r
-./taxonomyequalizer.o : taxonomyequalizer.cpp\r
- $(CC) $(CC_OPTIONS) taxonomyequalizer.cpp -c $(INCLUDE) -o ./taxonomyequalizer.o\r
-\r
-\r
-# Item # 167 -- phylotypecommand --\r
-./phylotypecommand.o : phylotypecommand.cpp\r
- $(CC) $(CC_OPTIONS) phylotypecommand.cpp -c $(INCLUDE) -o ./phylotypecommand.o\r
-\r
-\r
-# Item # 168 -- classifyseqscommand --\r
-./classifyseqscommand.o : classifyseqscommand.cpp\r
- $(CC) $(CC_OPTIONS) classifyseqscommand.cpp -c $(INCLUDE) -o ./classifyseqscommand.o\r
-\r
-\r
-# Item # 169 -- classify --\r
-./classify.o : classify.cpp\r
- $(CC) $(CC_OPTIONS) classify.cpp -c $(INCLUDE) -o ./classify.o\r
-\r
-\r
-# Item # 170 -- phylotree --\r
-./phylotree.o : phylotree.cpp\r
- $(CC) $(CC_OPTIONS) phylotree.cpp -c $(INCLUDE) -o ./phylotree.o\r
-\r
-\r
-# Item # 171 -- bayesian --\r
-./bayesian.o : bayesian.cpp\r
- $(CC) $(CC_OPTIONS) bayesian.cpp -c $(INCLUDE) -o ./bayesian.o\r
-\r
-\r
-# Item # 172 -- alignmentdb --\r
-./alignmentdb.o : alignmentdb.cpp\r
- $(CC) $(CC_OPTIONS) alignmentdb.cpp -c $(INCLUDE) -o ./alignmentdb.o\r
-\r
-\r
-# Item # 173 -- knn --\r
-./knn.o : knn.cpp\r
- $(CC) $(CC_OPTIONS) knn.cpp -c $(INCLUDE) -o ./knn.o\r
-\r
-\r
-# Item # 174 -- distancedb --\r
-./distancedb.o : distancedb.cpp\r
- $(CC) $(CC_OPTIONS) distancedb.cpp -c $(INCLUDE) -o ./distancedb.o\r
-\r
-\r
-# Item # 175 -- chimeraslayer --\r
-./chimeraslayer.o : chimeraslayer.cpp\r
- $(CC) $(CC_OPTIONS) chimeraslayer.cpp -c $(INCLUDE) -o ./chimeraslayer.o\r
-\r
-\r
-# Item # 176 -- slayer --\r
-./slayer.o : slayer.cpp\r
- $(CC) $(CC_OPTIONS) slayer.cpp -c $(INCLUDE) -o ./slayer.o\r
-\r
-\r
-# Item # 177 -- pcacommand --\r
-./pcacommand.o : pcacommand.cpp\r
- $(CC) $(CC_OPTIONS) pcacommand.cpp -c $(INCLUDE) -o ./pcacommand.o\r
-\r
-\r
-# Item # 178 -- formatcolumn --\r
-./formatcolumn.o : formatcolumn.cpp\r
- $(CC) $(CC_OPTIONS) formatcolumn.cpp -c $(INCLUDE) -o ./formatcolumn.o\r
-\r
-\r
-# Item # 179 -- formatphylip --\r
-./formatphylip.o : formatphylip.cpp\r
- $(CC) $(CC_OPTIONS) formatphylip.cpp -c $(INCLUDE) -o ./formatphylip.o\r
-\r
-\r
-# Item # 180 -- mgclustercommand --\r
-./mgclustercommand.o : mgclustercommand.cpp\r
- $(CC) $(CC_OPTIONS) mgclustercommand.cpp -c $(INCLUDE) -o ./mgclustercommand.o\r
-\r
-\r
-# Item # 181 -- getsharedotucommand --\r
-./getsharedotucommand.o : getsharedotucommand.cpp\r
- $(CC) $(CC_OPTIONS) getsharedotucommand.cpp -c $(INCLUDE) -o ./getsharedotucommand.o\r
-\r
-\r
-# Item # 182 -- maligner --\r
-./maligner.o : maligner.cpp\r
- $(CC) $(CC_OPTIONS) maligner.cpp -c $(INCLUDE) -o ./maligner.o\r
-\r
-\r
-# Item # 183 -- chimerarealigner --\r
-./chimerarealigner.o : chimerarealigner.cpp\r
- $(CC) $(CC_OPTIONS) chimerarealigner.cpp -c $(INCLUDE) -o ./chimerarealigner.o\r
-\r
-\r
-# Item # 184 -- bergerparker --\r
-./bergerparker.o : bergerparker.cpp\r
- $(CC) $(CC_OPTIONS) bergerparker.cpp -c $(INCLUDE) -o ./bergerparker.o\r
-\r
-\r
-# Item # 185 -- bstick --\r
-./bstick.o : bstick.cpp\r
- $(CC) $(CC_OPTIONS) bstick.cpp -c $(INCLUDE) -o ./bstick.o\r
-\r
-\r
-# Item # 186 -- sharedkstest --\r
-./sharedkstest.o : sharedkstest.cpp\r
- $(CC) $(CC_OPTIONS) sharedkstest.cpp -c $(INCLUDE) -o ./sharedkstest.o\r
-\r
-\r
-# Item # 187 -- qstat --\r
-./qstat.o : qstat.cpp\r
- $(CC) $(CC_OPTIONS) qstat.cpp -c $(INCLUDE) -o ./qstat.o\r
-\r
-\r
-# Item # 188 -- shen --\r
-./shen.o : shen.cpp\r
- $(CC) $(CC_OPTIONS) shen.cpp -c $(INCLUDE) -o ./shen.o\r
-\r
-\r
-# Item # 189 -- logsd --\r
-./logsd.o : logsd.cpp\r
- $(CC) $(CC_OPTIONS) logsd.cpp -c $(INCLUDE) -o ./logsd.o\r
-\r
-\r
-# Item # 190 -- geom --\r
-./geom.o : geom.cpp\r
- $(CC) $(CC_OPTIONS) geom.cpp -c $(INCLUDE) -o ./geom.o\r
-\r
-# Item # 191 -- parsesffcommand --\r
-./parsesffcommand.o : parsesffcommand.cpp\r
- $(CC) $(CC_OPTIONS) parsesffcommand.cpp -c $(INCLUDE) -o ./parsesffcommand.o\r
-\r
-# Item # 192 -- chimeraccodecommand --\r
-./chimeraccodecommand.o : chimeraccodecommand.cpp\r
- $(CC) $(CC_OPTIONS) chimeraccodecommand.cpp -c $(INCLUDE) -o ./chimeraccodecommand.o\r
-\r
-# Item # 193 -- chimeracheckcommand --\r
-./chimeracheckcommand.o : chimeracheckcommand.cpp\r
- $(CC) $(CC_OPTIONS) chimeracheckcommand.cpp -c $(INCLUDE) -o ./chimeracheckcommand.o\r
-\r
-\r
-# Item # 194 -- chimeraslayercommand --\r
-./chimeraslayercommand.o : chimeraslayercommand.cpp\r
- $(CC) $(CC_OPTIONS) chimeraslayercommand.cpp -c $(INCLUDE) -o ./chimeraslayercommand.o\r
-\r
-# Item # 195 -- chimerapintailcommand --\r
-./chimerapintailcommand.o : chimerapintailcommand.cpp\r
- $(CC) $(CC_OPTIONS) chimerapintailcommand.cpp -c $(INCLUDE) -o ./chimerapintailcommand.o\r
-\r
-# Item # 196 -- chimerabellerophoncommand --\r
-./chimerabellerophoncommand.o : chimerabellerophoncommand.cpp\r
- $(CC) $(CC_OPTIONS) chimerabellerophoncommand.cpp -c $(INCLUDE) -o ./chimerabellerophoncommand.o\r
-\r
-# Item # 197 -- phylosummary --\r
-./phylosummary.o : phylosummary.cpp\r
- $(CC) $(CC_OPTIONS) phylosummary.cpp -c $(INCLUDE) -o ./phylosummary.o\r
-\r
-# Item # 198 -- setlogfilecommand --\r
-./setlogfilecommand.o : setlogfilecommand.cpp\r
- $(CC) $(CC_OPTIONS) setlogfilecommand.cpp -c $(INCLUDE) -o ./setlogfilecommand.o\r
-\r
-# Item # 199 -- phylodiversity --\r
-./phylodiversity.o : phylodiversity.cpp\r
- $(CC) $(CC_OPTIONS) phylodiversity.cpp -c $(INCLUDE) -o ./phylodiversity.o\r
-\r
-# Item # 200 -- phylodiversitycommand --\r
-./phylodiversitycommand.o : phylodiversitycommand.cpp\r
- $(CC) $(CC_OPTIONS) phylodiversitycommand.cpp -c $(INCLUDE) -o ./phylodiversitycommand.o\r
-\r
-# Item # 201 -- makegroupcommand --\r
-./makegroupcommand.o : makegroupcommand.cpp\r
- $(CC) $(CC_OPTIONS) makegroupcommand.cpp -c $(INCLUDE) -o ./makegroupcommand.o\r
-\r
-# Item # 202 -- chopseqscommand --\r
-./chopseqscommand.o : chopseqscommand.cpp\r
- $(CC) $(CC_OPTIONS) chopseqscommand.cpp -c $(INCLUDE) -o ./chopseqscommand.o\r
-\r
-# Item # 203 -- clearcutcommand --\r
-./clearcutcommand.o : clearcutcommand.cpp\r
- $(CC) $(CC_OPTIONS) clearcutcommand.cpp -c $(INCLUDE) -o ./clearcutcommand.o\r
-\r
-# Item # 204 -- catchallcommand --\r
-./catchallcommand.o : catchallcommand.cpp\r
- $(CC) $(CC_OPTIONS) catchallcommand.cpp -c $(INCLUDE) -o ./catchallcommand.o\r
-\r
-# Item # 205 -- splitabundcommand --\r
-./splitabundcommand.o : splitabundcommand.cpp\r
- $(CC) $(CC_OPTIONS) splitabundcommand.cpp -c $(INCLUDE) -o ./splitabundcommand.o\r
- \r
-# Item # 206 -- splitmatrix --\r
-./splitmatrix.o : splitmatrix.cpp\r
- $(CC) $(CC_OPTIONS) splitmatrix.cpp -c $(INCLUDE) -o ./splitmatrix.o\r
- \r
-# Item # 207 -- splitmatrix --\r
-./clustersplitcommand.o : clustersplitcommand.cpp\r
- $(CC) $(CC_OPTIONS) clustersplitcommand.cpp -c $(INCLUDE) -o ./clustersplitcommand.o\r