$(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
rsem-synthesis-reference-transcripts : utils.h my_assert.h Transcript.h Transcripts.h synthesisRef.cpp
$(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
rsem-synthesis-reference-transcripts : utils.h my_assert.h Transcript.h Transcripts.h synthesisRef.cpp