m->mothurOut("[WARNING]: did not find paired read for " + itUniques->first + ", ignoring.\n");
}
for (map<string, pairFastqRead>:: iterator it = pairUniques.begin(); it != pairUniques.end(); it++) {
m->mothurOut("[WARNING]: did not find paired read for " + itUniques->first + ", ignoring.\n");
}
for (map<string, pairFastqRead>:: iterator it = pairUniques.begin(); it != pairUniques.end(); it++) {