//ofstream out;
//string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
//m->openOutputFile(newFastaName, out);
//ofstream out;
//string newFastaName = outputDir + m->getRootName(m->getSimpleName(fastafile)) + "numsAdded.fasta";
//m->openOutputFile(newFastaName, out);