- if (key == "distfile" ) { distfile = value; inputFileName = value; fileroot = value; }
- if (key == "listfile" ) { listfile = value; inputFileName = value; fileroot = value; }
- if (key == "rabundfile" ) { rabundfile = value; inputFileName = value; fileroot = value; }
- if (key == "sabundfile" ) { sabundfile = value; inputFileName = value; fileroot = value; }
+ if (key == "phylipfile" ) { phylipfile = value; inputFileName = value; fileroot = value; format = "phylip"; }
+ if (key == "columnfile" ) { columnfile = value; inputFileName = value; fileroot = value; format = "column"; }
+ if (key == "listfile" ) { listfile = value; inputFileName = value; fileroot = value; format = "list"; }
+ if (key == "rabundfile" ) { rabundfile = value; inputFileName = value; fileroot = value; format = "rabund"; }
+ if (key == "sabundfile" ) { sabundfile = value; inputFileName = value; fileroot = value; format = "sabund"; }