- if((listfile != "") && (groupfile != "")) { format = "shared"; }
- if((phylipfile != "") && (groupfile != "")) { format = "matrix"; }
-
+ if ((listfile != "") && (groupfile != "")) { format = "shared"; }
+ if ((phylipfile != "") && (groupfile != "")) { format = "matrix"; }
+
+ //set default value for cutoff
+ if (commandName == "dist.seqs") { format = "fasta"; inputFileName = fastafile; fileroot = fastafile; }
+