bool abort, allLines, unique;
vector<string> Groups;
map<string, string> groupFinder;
map<string, string>::iterator it;
vector<Sequence> seqs;
vector<string> outputNames;
bool abort, allLines, unique;
vector<string> Groups;
map<string, string> groupFinder;
map<string, string>::iterator it;
vector<Sequence> seqs;
vector<string> outputNames;