map<string, int> nameToIndex; //maps sequence name to index in sparsematrix
map<string, int> nameToIndex; //maps sequence name to index in sparsematrix
- map<int, string>::iterator it;
- map<int, string>::iterator it2;
- map<string, int>::iterator it3;
void readNamesFile();
void readNamesFile();
- string FindRep(int); // returns name of "representative" sequence of given bin.
+ int process(ListVector*);
+ string FindRep(int, string&, ListVector*); // returns name of "representative" sequence of given bin. //and fill a string containing the groups in that bin if a groupfile is given