-#ifndef GETGROUPCOMMAND_H
-#define GETGROUPCOMMAND_H
-
-/*
- * getgroupcommand.h
- * Mothur
- *
- * Created by Thomas Ryabin on 2/2/09.
- * Copyright 2009 Schloss Lab UMASS Amherst. All rights reserved.
- *
- */
-
-#include "command.hpp"
-
-class GetgroupCommand : public Command {
-public:
- GetgroupCommand(string);
- GetgroupCommand();
- ~GetgroupCommand() {}
-
- vector<string> setParameters();
- string getCommandName() { return "get.group"; }
- string getCommandCategory() { return "OTU-Based Approaches"; }
- string getHelpString();
- string getCitation() { return "http://www.mothur.org/wiki/Get.group"; }
- string getDescription() { return "outputs group names"; }
-
-
- int execute();
- void help() { m->mothurOut(getHelpString()); }
-
-
-private:
-
- string outputFile, sharedfile, outputDir;
- vector<string> outputNames;
- ofstream out;
- ifstream in;
- bool abort;
-
-};
-
-#endif