helpString += "You may not use any parameters with the get.group command.\n";
helpString += "The get.group command should be in the following format: \n";
helpString += "get.group()\n";
helpString += "You may not use any parameters with the get.group command.\n";
helpString += "The get.group command should be in the following format: \n";
helpString += "get.group()\n";
//**********************************************************************************************************************
GetgroupCommand::GetgroupCommand(){
try {
abort = true; calledHelp = true;
setParameters();
//**********************************************************************************************************************
GetgroupCommand::GetgroupCommand(){
try {
abort = true; calledHelp = true;
setParameters();
//if the user changes the input directory command factory will send this info to us in the output parameter
string inputDir = validParameter.validFile(parameters, "inputdir", false);
if (inputDir == "not found"){ inputDir = ""; }
//if the user changes the input directory command factory will send this info to us in the output parameter
string inputDir = validParameter.validFile(parameters, "inputdir", false);
if (inputDir == "not found"){ inputDir = ""; }
InputData input(sharedfile, "sharedfile");
vector<SharedRAbundVector*> lookup = input.getSharedRAbundVectors();
for (int i = 0; i < lookup.size(); i++) {
InputData input(sharedfile, "sharedfile");
vector<SharedRAbundVector*> lookup = input.getSharedRAbundVectors();
for (int i = 0; i < lookup.size(); i++) {