(cd $FROM_SRR_SRR;
fastq-dump --gzip ${FROM_SRR_SRR}.sra;
bwa mem -t ${CORES} $FROM_SRR_REF ${FROM_SRR_SRR}.fastq.gz | samtools view -b -o ${FROM_SRR_SRR}.bam;
(cd $FROM_SRR_SRR;
fastq-dump --gzip ${FROM_SRR_SRR}.sra;
bwa mem -t ${CORES} $FROM_SRR_REF ${FROM_SRR_SRR}.fastq.gz | samtools view -b -o ${FROM_SRR_SRR}.bam;