- vector<string> getRequiredParameters();\r
- vector<string> getValidParameters();\r
- vector<string> getRequiredFiles();\r
- map<string, vector<string> > getOutputFiles() { return outputTypes; }\r
- int execute(); \r
- void help();\r
+ \r
+ vector<string> setParameters();\r
+ string getCommandName() { return "filter.seqs"; }\r
+ string getCommandCategory() { return "Sequence Processing"; }\r
+ string getHelpString(); \r
+ string getCitation() { return "http://www.mothur.org/wiki/Filter.seqs"; }\r
+ string getDescription() { return "removes columns from alignments based on a criteria defined by the user"; }\r
+ \r
+ int execute(); \r
+ void help() { m->mothurOut(getHelpString()); } \r