-/******************************************************/
-//This function checks to make sure the user entered appropriate
-// format parameters on a distfile read
-void ErrorCheck::validateSeqsFiles() {
- try {
- ifstream filehandle;
- int ableToOpen;
-
- //checks to make sure only one file type is given
- if (phylipfile != "") {
- if ((nexusfile != "") || (fastafile != "") || (clustalfile != "")) {
- cout << "You may enter ONLY ONE of the following: phylip, fasta, nexus or clustal." << endl; errorFree = false; }
- else {
- ableToOpen = openInputFile(phylipfile, filehandle);
- filehandle.close();
- if (ableToOpen == 1) { //unable to open
- errorFree = false;
- }
- }
- }else if (nexusfile != "") {
- if ((phylipfile != "") || (fastafile != "") || (clustalfile != "")) {
- cout << "You may enter ONLY ONE of the following: phylip, fasta, nexus or clustal." << endl; errorFree = false; }
- else {
- ableToOpen = openInputFile(nexusfile, filehandle);
- filehandle.close();
- if (ableToOpen == 1) { //unable to open
- errorFree = false;
- }
- }
- }else if (fastafile != "") {
- if ((phylipfile != "") || (nexusfile != "") || (clustalfile != "")) {
- cout << "You may enter ONLY ONE of the following: phylip, fasta, nexus or clustal." << endl; errorFree = false; }
- else {
- ableToOpen = openInputFile(fastafile, filehandle);
- filehandle.close();
- if (ableToOpen == 1) { //unable to open
- errorFree = false;
- }
- }
- }else if (clustalfile != "") {
- if ((phylipfile != "") || (nexusfile != "") || (fastafile != "")) {
- cout << "You may enter ONLY ONE of the following: phylip, fasta, nexus or clustal." << endl; errorFree = false; }
- else {
- ableToOpen = openInputFile(clustalfile, filehandle);
- filehandle.close();
- if (ableToOpen == 1) { //unable to open
- errorFree = false;
- }
- }
- }else if (candidatefile != "") {
- ableToOpen = openInputFile(candidatefile, filehandle);
- filehandle.close();
- if (ableToOpen == 1) { //unable to open
- errorFree = false;
- }
- }
-
-
- }
- catch(exception& e) {
- cout << "Standard Error: " << e.what() << " has occurred in the ErrorCheck class Function validateSeqsFiles. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
- catch(...) {
- cout << "An unknown error has occurred in the ErrorCheck class function validateSeqsFiles. Please contact Pat Schloss at pschloss@microbio.umass.edu." << "\n";
- exit(1);
- }
-}
-
-/*******************************************************/
-