- DistanceDB(string, string);
- Sequence* findClosestSequence(Sequence*);
+
+ DistanceDB();
+ ~DistanceDB() { delete distCalculator; }
+
+ void generateDB() {} //doesn't generate a search db
+ void addSequence(Sequence);
+ string getName(int i) { return data[i].getName(); }
+ vector<int> findClosestSequences(Sequence*, int); // returns indexes of n closest sequences to query
+
+ #ifdef USE_MPI
+ int MPISend(int) {return 0;}
+ int MPIRecv(int) {return 0;}
+ #endif