- void appendFiles(string, string);
- void createProcesses(string, string);
- int driver(Dist*, SequenceDB*, int, int, string, string, float);
+ bool abort;
+ vector<string> Estimators; //holds estimators to be used
+
+ //void m->appendFiles(string, string);
+ void createProcesses(string);
+ int driver(/*Dist*, SequenceDB, */int, int, string, float);
+ int driver(int, int, string, string);
+
+ #ifdef USE_MPI
+ int driverMPI(int, int, MPI_File&, float);
+ int driverMPI(int, int, string, unsigned long int&);
+ int driverMPI(int, int, string, unsigned long int&, string);
+ #endif
+
+ //int convertMatrix(string);
+ bool sanityCheck();
+ //int convertToLowerTriangle(string);