//**********************************************************************************************************************
DeconvoluteCommand::DeconvoluteCommand(){
try {
//**********************************************************************************************************************
DeconvoluteCommand::DeconvoluteCommand(){
try {
vector<string> tempOutNames;
outputTypes["fasta"] = tempOutNames;
outputTypes["name"] = tempOutNames;
vector<string> tempOutNames;
outputTypes["fasta"] = tempOutNames;
outputTypes["name"] = tempOutNames;
/**************************************************************************************/
DeconvoluteCommand::DeconvoluteCommand(string option) {
try {
/**************************************************************************************/
DeconvoluteCommand::DeconvoluteCommand(string option) {
try {
//prepare filenames and open files
string outNameFile = outputDir + m->getRootName(m->getSimpleName(inFastaName)) + "names";
//prepare filenames and open files
string outNameFile = outputDir + m->getRootName(m->getSimpleName(inFastaName)) + "names";