else if(commandName == "sub.sample") { pipecommand = new SubSampleCommand(optionString); }
else if(commandName == "indicator") { pipecommand = new IndicatorCommand(optionString); }
else if(commandName == "consensus.seqs") { pipecommand = new ConsensusSeqsCommand(optionString); }
else if(commandName == "sub.sample") { pipecommand = new SubSampleCommand(optionString); }
else if(commandName == "indicator") { pipecommand = new IndicatorCommand(optionString); }
else if(commandName == "consensus.seqs") { pipecommand = new ConsensusSeqsCommand(optionString); }