#include "makegroupcommand.h"
#include "chopseqscommand.h"
#include "clearcutcommand.h"
#include "makegroupcommand.h"
#include "chopseqscommand.h"
#include "clearcutcommand.h"
commands["make.group"] = "make.group";
commands["chop.seqs"] = "chop.seqs";
commands["clearcut"] = "clearcut";
commands["make.group"] = "make.group";
commands["chop.seqs"] = "chop.seqs";
commands["clearcut"] = "clearcut";
commands["classify.seqs"] = "MPIEnabled";
commands["dist.seqs"] = "MPIEnabled";
commands["filter.seqs"] = "MPIEnabled";
commands["classify.seqs"] = "MPIEnabled";
commands["dist.seqs"] = "MPIEnabled";
commands["filter.seqs"] = "MPIEnabled";
else if(commandName == "make.group") { command = new MakeGroupCommand(optionString); }
else if(commandName == "chop.seqs") { command = new ChopSeqsCommand(optionString); }
else if(commandName == "clearcut") { command = new ClearcutCommand(optionString); }
else if(commandName == "make.group") { command = new MakeGroupCommand(optionString); }
else if(commandName == "chop.seqs") { command = new ChopSeqsCommand(optionString); }
else if(commandName == "clearcut") { command = new ClearcutCommand(optionString); }