else if(commandName == "fastq.info") { command = new ParseFastaQCommand(optionString); }
else if(commandName == "pipeline.pds") { command = new PipelineCommand(optionString); }
else if(commandName == "deunique.seqs") { command = new DeUniqueSeqsCommand(optionString); }
else if(commandName == "pairwise.seqs") { command = new PairwiseSeqsCommand(optionString); }
else if(commandName == "cluster.classic") { command = new ClusterDoturCommand(optionString); }
else if(commandName == "sub.sample") { command = new SubSampleCommand(optionString); }
else if(commandName == "fastq.info") { command = new ParseFastaQCommand(optionString); }
else if(commandName == "pipeline.pds") { command = new PipelineCommand(optionString); }
else if(commandName == "deunique.seqs") { command = new DeUniqueSeqsCommand(optionString); }
else if(commandName == "pairwise.seqs") { command = new PairwiseSeqsCommand(optionString); }
else if(commandName == "cluster.classic") { command = new ClusterDoturCommand(optionString); }
else if(commandName == "sub.sample") { command = new SubSampleCommand(optionString); }