commands["pairwise.seqs"] = "MPIEnabled";
commands["pipeline.pds"] = "MPIEnabled";
commands["classify.seqs"] = "MPIEnabled";
commands["pairwise.seqs"] = "MPIEnabled";
commands["pipeline.pds"] = "MPIEnabled";
commands["classify.seqs"] = "MPIEnabled";
else if(commandName == "consensus.seqs") { command = new ConsensusSeqsCommand(optionString); }
else if(commandName == "corr.axes") { command = new CorrAxesCommand(optionString); }
else if(commandName == "remove.rare") { command = new RemoveRareCommand(optionString); }
else if(commandName == "consensus.seqs") { command = new ConsensusSeqsCommand(optionString); }
else if(commandName == "corr.axes") { command = new CorrAxesCommand(optionString); }
else if(commandName == "remove.rare") { command = new RemoveRareCommand(optionString); }
else if(commandName == "consensus.seqs") { pipecommand = new ConsensusSeqsCommand(optionString); }
else if(commandName == "corr.axes") { pipecommand = new CorrAxesCommand(optionString); }
else if(commandName == "remove.rare") { pipecommand = new RemoveRareCommand(optionString); }
else if(commandName == "consensus.seqs") { pipecommand = new ConsensusSeqsCommand(optionString); }
else if(commandName == "corr.axes") { pipecommand = new CorrAxesCommand(optionString); }
else if(commandName == "remove.rare") { pipecommand = new RemoveRareCommand(optionString); }
else if(commandName == "consensus.seqs") { shellcommand = new ConsensusSeqsCommand(); }
else if(commandName == "corr.axes") { shellcommand = new CorrAxesCommand(); }
else if(commandName == "remove.rare") { shellcommand = new RemoveRareCommand(); }
else if(commandName == "consensus.seqs") { shellcommand = new ConsensusSeqsCommand(); }
else if(commandName == "corr.axes") { shellcommand = new CorrAxesCommand(); }
else if(commandName == "remove.rare") { shellcommand = new RemoveRareCommand(); }