+ else if(commandName == "get.current") { command = new GetCurrentCommand(optionString); }
+ else if(commandName == "set.current") { command = new SetCurrentCommand(optionString); }
+ else if(commandName == "anosim") { command = new AnosimCommand(optionString); }
+ else if(commandName == "make.shared") { command = new SharedCommand(optionString); }
+ else if(commandName == "get.commandinfo") { command = new GetCommandInfoCommand(optionString); }
+ else if(commandName == "deunique.tree") { command = new DeuniqueTreeCommand(optionString); }
+ else if((commandName == "count.seqs") || (commandName == "make.table")) { command = new CountSeqsCommand(optionString); }
+ else if(commandName == "count.groups") { command = new CountGroupsCommand(optionString); }
+ else if(commandName == "clear.memory") { command = new ClearMemoryCommand(optionString); }
+ else if(commandName == "summary.tax") { command = new SummaryTaxCommand(optionString); }
+ else if(commandName == "summary.qual") { command = new SummaryQualCommand(optionString); }
+ else if(commandName == "chimera.perseus") { command = new ChimeraPerseusCommand(optionString); }
+ else if(commandName == "shhh.seqs") { command = new ShhhSeqsCommand(optionString); }
+ else if(commandName == "otu.association") { command = new OTUAssociationCommand(optionString); }
+ else if(commandName == "sort.seqs") { command = new SortSeqsCommand(optionString); }
+ else if(commandName == "classify.tree") { command = new ClassifyTreeCommand(optionString); }
+ else if(commandName == "cooccurrence") { command = new CooccurrenceCommand(optionString); }
+ else if(commandName == "pcr.seqs") { command = new PcrSeqsCommand(optionString); }
+ else if(commandName == "create.database") { command = new CreateDatabaseCommand(optionString); }
+ else if(commandName == "make.biom") { command = new MakeBiomCommand(optionString); }
+ else if(commandName == "get.coremicrobiome") { command = new GetCoreMicroBiomeCommand(optionString); }
+ else if(commandName == "list.otulabels") { command = new ListOtuLabelsCommand(optionString); }
+ else if(commandName == "get.otulabels") { command = new GetOtuLabelsCommand(optionString); }
+ else if(commandName == "remove.otulabels") { command = new RemoveOtuLabelsCommand(optionString); }
+ else if(commandName == "make.contigs") { command = new MakeContigsCommand(optionString); }
+ else if(commandName == "load.logfile") { command = new LoadLogfileCommand(optionString); }