- mothurOut("The collect.shared command can only be executed after a successful read.otu command.\n");
- mothurOut("The collect.shared command parameters are label, freq, calc and groups. No parameters are required \n");
- mothurOut("The collect.shared command should be in the following format: \n");
- mothurOut("collect.shared(label=yourLabel, freq=yourFreq, calc=yourEstimators, groups=yourGroups).\n");
- mothurOut("Example collect.shared(label=unique-.01-.03, freq=10, groups=B-C, calc=sharedchao-sharedace-jabund-sorensonabund-jclass-sorclass-jest-sorest-thetayc-thetan).\n");
- mothurOut("The default values for freq is 100 and calc are sharedsobs-sharedchao-sharedace-jabund-sorensonabund-jclass-sorclass-jest-sorest-thetayc-thetan.\n");
- mothurOut("The default value for groups is all the groups in your groupfile.\n");
+ m->mothurOut("The collect.shared command can only be executed after a successful read.otu command.\n");
+ m->mothurOut("The collect.shared command parameters are label, freq, calc and groups. No parameters are required \n");
+ m->mothurOut("The collect.shared command should be in the following format: \n");
+ m->mothurOut("collect.shared(label=yourLabel, freq=yourFreq, calc=yourEstimators, groups=yourGroups).\n");
+ m->mothurOut("Example collect.shared(label=unique-.01-.03, freq=10, groups=B-C, calc=sharedchao-sharedace-jabund-sorensonabund-jclass-sorclass-jest-sorest-thetayc-thetan).\n");
+ m->mothurOut("The default values for freq is 100 and calc are sharedsobs-sharedchao-sharedace-jabund-sorensonabund-jclass-sorclass-jest-sorest-thetayc-thetan.\n");
+ m->mothurOut("The default value for groups is all the groups in your groupfile.\n");
+ m->mothurOut("The freq parameter is used indicate when to output your data. It is a percentage of the number of sequences. By default it is set to 0.10, meaning 10%. \n");