+ ClearcutCommand();
+ ~ClearcutCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "clearcut"; }
+ string getCommandCategory() { return "Hypothesis Testing"; }
+ string getOutputFileNameTag(string, string);
+ string getHelpString();
+ string getCitation() { return "Sheneman L, Evans J, Foster JA (2006). Clearcut: a fast implementation of relaxed neighbor joining. Bioinformatics 22: 2823-4. \nhttp://www.mothur.org/wiki/Clearcut"; }
+ string getDescription() { return "create a tree from a fasta or phylip file"; }
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }