+//**********************************************************************************************************************
+vector<string> ClassifyOtuCommand::getValidParameters(){
+ try {
+ string AlignArray[] = {"list","label","name","taxonomy","basis","cutoff","probs","group","reftaxonomy","outputdir","inputdir"};
+ vector<string> myArray (AlignArray, AlignArray+(sizeof(AlignArray)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ClassifyOtuCommand", "getValidParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+ClassifyOtuCommand::ClassifyOtuCommand(){
+ try {
+ abort = true; calledHelp = true;
+ vector<string> tempOutNames;
+ outputTypes["constaxonomy"] = tempOutNames;
+ outputTypes["taxsummary"] = tempOutNames;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ClassifyOtuCommand", "ClassifyOtuCommand");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> ClassifyOtuCommand::getRequiredParameters(){
+ try {
+ string Array[] = {"list","taxonomy"};
+ vector<string> myArray (Array, Array+(sizeof(Array)/sizeof(string)));
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ClassifyOtuCommand", "getRequiredParameters");
+ exit(1);
+ }
+}
+//**********************************************************************************************************************
+vector<string> ClassifyOtuCommand::getRequiredFiles(){
+ try {
+ vector<string> myArray;
+ return myArray;
+ }
+ catch(exception& e) {
+ m->errorOut(e, "ClassifyOtuCommand", "getRequiredFiles");
+ exit(1);
+ }
+}