if (chimera->getUnaligned()) {
mothurOut("Your template sequences are different lengths, please correct."); mothurOutEndLine();
if (chimera->getUnaligned()) {
mothurOut("Your template sequences are different lengths, please correct."); mothurOutEndLine();
remove(outputFileName.c_str());
rename(tempHeader.c_str(), outputFileName.c_str());
remove(outputFileName.c_str());
rename(tempHeader.c_str(), outputFileName.c_str());
delete chimera;
if (method == "chimeracheck") { remove(accnosFileName.c_str()); mothurOutEndLine(); mothurOut("This method does not determine if a sequence is chimeric, but allows you to make that determination based on the IS values."); mothurOutEndLine(); }
delete chimera;
if (method == "chimeracheck") { remove(accnosFileName.c_str()); mothurOutEndLine(); mothurOut("This method does not determine if a sequence is chimeric, but allows you to make that determination based on the IS values."); mothurOutEndLine(); }