string temp = validParameter.validFile(parameters, "processors", false); if (temp == "not found"){ temp = m->getProcessors(); }
m->setProcessors(temp);
string temp = validParameter.validFile(parameters, "processors", false); if (temp == "not found"){ temp = m->getProcessors(); }
m->setProcessors(temp);
temp = validParameter.validFile(parameters, "ksize", false); if (temp == "not found") { temp = "7"; }
temp = validParameter.validFile(parameters, "ksize", false); if (temp == "not found") { temp = "7"; }
temp = validParameter.validFile(parameters, "svg", false); if (temp == "not found") { temp = "F"; }
svg = m->isTrue(temp);
if (nameFileNames.size() != 0) { svg = true; }
temp = validParameter.validFile(parameters, "increment", false); if (temp == "not found") { temp = "10"; }
temp = validParameter.validFile(parameters, "svg", false); if (temp == "not found") { temp = "F"; }
svg = m->isTrue(temp);
if (nameFileNames.size() != 0) { svg = true; }
temp = validParameter.validFile(parameters, "increment", false); if (temp == "not found") { temp = "10"; }
- vector<unsigned long long> positions = m->divideFile(fastaFileNames[i], processors);
-
- for (int s = 0; s < (positions.size()-1); s++) {
- lines.push_back(new linePair(positions[s], positions[(s+1)]));
- }
+ vector<unsigned long long> positions = m->divideFile(fastaFileNames[i], processors);
+
+ for (int s = 0; s < (positions.size()-1); s++) {
+ lines.push_back(new linePair(positions[s], positions[(s+1)]));
+ }
+
numSeqs = driver(lines[0], outputFileName, fastaFileNames[i]);
if (m->control_pressed) { for (int j = 0; j < lines.size(); j++) { delete lines[j]; } lines.clear(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; }
numSeqs = driver(lines[0], outputFileName, fastaFileNames[i]);
if (m->control_pressed) { for (int j = 0; j < lines.size(); j++) { delete lines[j]; } lines.clear(); for (int j = 0; j < outputNames.size(); j++) { m->mothurRemove(outputNames[j]); } outputTypes.clear(); delete chimera; return 0; }