- bool filter, correction, svg;
- int processors, window, increment, numWanted, kmerSize, match, misMatch, minSim, parents, iters;
+ vector<Sequence*> templateSeqs;
+ bool filter, correction, svg, unaligned;
+ int processors, window, increment, numWanted, kmerSize, match, misMatch, minSim, minCov, minBS, minSNP, parents, iters;