- Chimera(){ m = MothurOut::getInstance(); length = 0; unaligned = false; }
- //Chimera(string) { m = MothurOut::getInstance(); }
- //Chimera(string, bool, string) { m = MothurOut::getInstance(); }
- //Chimera(string, string) { m = MothurOut::getInstance(); }
- virtual ~Chimera(){ for (int i = 0; i < templateSeqs.size(); i++) { delete templateSeqs[i]; } };
- //virtual void setFilter(bool f) { filter = f; }
- //virtual void setCorrection(bool c) { correction = c; }
- //virtual void setProcessors(int p) { processors = p; }
- //virtual void setWindow(int w) { window = w; }
- //virtual void setIncrement(int i) { increment = i; }
- //virtual void setNumWanted(int n) { numWanted = n; }
- //virtual void setKmerSize(int k) { kmerSize = k; }
- //virtual void setSVG(int s) { svg = s; }
- //virtual void setName(string n) { name = n; }
- //virtual void setMatch(int m) { match = m; }
- //virtual void setMisMatch(int m) { misMatch = m; }
- //virtual void setDivR(float d) { divR = d; }
- //virtual void setParents(int p) { parents = p; }
- //virtual void setMinSim(int s) { minSim = s; }
- //virtual void setMinCoverage(int c) { minCov = c; }
- //virtual void setMinBS(int b) { minBS = b; }
- //virtual void setMinSNP(int s) { minSNP = s; }
- //virtual void setIters(int i) { iters = i; }