- if ( $end - $beg + 1 > length $record->{ "SEQ" } ) {
- $record->{ "SEQ" } = substr $record->{ "SEQ" }, $beg;
- } else {
- $record->{ "SEQ" } = substr $record->{ "SEQ" }, $beg, $end - $beg + 1;
+ if ( $end - $beg + 1 > length $record->{ "SEQ" } )
+ {
+ $record->{ "SEQ" } = substr $record->{ "SEQ" }, $beg;
+ $record->{ "SCORES" } = substr $record->{ "SEQ" }, $beg if $record->{ "SCORES" };
+ }
+ else
+ {
+ $record->{ "SEQ" } = substr $record->{ "SEQ" }, $beg, $end - $beg + 1;
+ $record->{ "SCORES" } = substr $record->{ "SCORES" }, $beg, $end - $beg + 1 if $record->{ "SCORES" };