string tfileroot = tfile.substr(0,tfile.find_last_of(".")+1);
string tempfileroot = getRootName(getSimpleName(tempFile));
string phyloTreeName = tfileroot + "tree.train";
string tfileroot = tfile.substr(0,tfile.find_last_of(".")+1);
string tempfileroot = getRootName(getSimpleName(tempFile));
string phyloTreeName = tfileroot + "tree.train";