- vector< map<string, int> > confidenceScores; //you need the added vector level of confusion to account for the level that name is seen since they can be the same
- //map of classification to confidence for all areas seen
- //ie. Bacteria;Alphaproteobacteria;Rhizobiales;Azorhizobium_et_rel.;Methylobacterium_et_rel.;Bosea;
- //ie. Bacteria -> 100, Alphaproteobacteria -> 100, Rhizobiales -> 87, Azorhizobium_et_rel. -> 78, Methylobacterium_et_rel. -> 70, Bosea -> 50
- confidenceScores.resize(100); //if you have more than 100 levels of classification...
-
- map<string, int>::iterator itBoot;
- map<string, int>::iterator itBoot2;
+ map<int, int> confidenceScores;
+
+ map<int, int>::iterator itBoot;
+ map<int, int>::iterator itBoot2;